Thank you everyone for your time and patience. I got a bit lost trying to understand the acronyms and details of the rules you mention but I really appreciate your efforts in helping me. So, I never overstayed the 6 months and my partner is my PR sponsor so my understanding is a have a chance that my application will be looked at. There's also the possibility that it will be returned.
It may just make more sense to wait until I have enough days after my PR was approved, which according to the physical presence calculator is in one year time.
Thank you again everybody.