Etriumph, you don't have to worried about it, I did same thing and I just called them 613 - 946 - 0953, its the only way to make sure if its a problem or not. A lady answered and she was really nice, I explained her that I just want the FOSS notes , but "somebody" suggest me or I misunderstood and I asked for In Canada File (Including FOSS notes), so I told her I was worried because I don't wanted to delay my aplication in any way just for asking for those notes. She very kindly explain to me that this process takes only 5 minutes to make photocopies and definitely NOT in any way is going to delay aplication.
The difference between asking for FOSS notes and In Canada File (Including FOSS notes) is very simple, FOSS notes are a few pages of the things entered by the officers, what they think, next step, ask for more info, etc. and is good to know them, may be helpful. and In Canada File (Including FOSS notes) is the FOSS notes and a COPY of a copy of your whole aplication. And if you ask one or the other there is not going to represent delays.
Hope this help you Etriumph, good luck!