It's hard to say for sure - but it should be processed. Might depend on the errors and it might depend on whether they were corrected before the original work permit expired.
If the BOWP is refused and the primary applicant no longer holds a valid work permit at the time that refusal, then you'll fall out of status in Canada. You will need to submit a restoration application to restore status to visitor. Unfortunately you'll need to stop working as soon as the BOWP is refused.